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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38837663_38839590_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38837663 - 38839590
Intron Length:
1928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
CTATGTGTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AATTTTCTATGT
Flanking Amino Acid:
IAWEKSIMKVYCQICRKGDN
Intron Amino Acid Position:
1894

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.3
77.9
36.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
71.1
0.48
1
65.4
40.9
Minor 5ss
40.1
-1.1
3.4
58.8
40.3
Minor BPS
44.2
-0.3
2
63.44
41.1

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027136
38832436 - 38926074
93639
ENSAPLT00000023878
38828946 - 38902865
73920
ENSAPLT00000022536
38832436 - 38902863
70428
ENSAPLT00000016494
38828946 - 38902865
73920
ENSAPLT00000047825
38828946 - 38902865
73920