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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38839727_38840111_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38839727 - 38840111
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGTTTT
5'SS Class:
major
3'SS Sequence:
TATTTCAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTCTCTATATTT
Flanking Amino Acid:
PAPSISGDGDGAEEDIAPGL
Intron Amino Acid Position:
1848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.8
38.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77
0.61
1
71.6
38.1
Minor 5ss
44.3
-0.6
3.2
57.9
46.7
Minor BPS
54.6
0.22
1.9
76.24
41.2

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023878
38828946 - 38902865
73920
ENSAPLT00000022536
38832436 - 38902863
70428
ENSAPLT00000047825
38828946 - 38902865
73920
ENSAPLT00000016494
38828946 - 38902865
73920
ENSAPLT00000041419
38838649 - 38902863
64215
ENSAPLT00000027136
38832436 - 38926074
93639