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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38840423_38841332_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38840423 - 38841332
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTAACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTCTGTTAACA
Flanking Amino Acid:
RVASASLQVKGWLCPEPASE
Intron Amino Acid Position:
1745

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.7
37.5
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
67
0.38
0.9
62.3
37.7
Minor 5ss
31.6
-2.1
3.1
40.3
45.3
Minor BPS
64.8
0.46
2
80.35
35.4

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023878
38828946 - 38902865
73920
ENSAPLT00000022536
38832436 - 38902863
70428
ENSAPLT00000047825
38828946 - 38902865
73920
ENSAPLT00000016494
38828946 - 38902865
73920
ENSAPLT00000041419
38838649 - 38902863
64215
ENSAPLT00000027136
38832436 - 38926074
93639