Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38842565_38843102_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38842565 - 38843102

Intron Length:

538

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

ATTTTCTGTGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

ATTATGTTAAAA

Flanking Amino Acid:

LSPFALPPLQQMKSGLPIMG

Intron Amino Acid Position:

1547

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.9

1.13

0.6

92.3

16.1

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

77.9

0.63

0.9

74.2

35.9

Minor 5ss

-1.7

2.7

41.8

44.8

Minor BPS

49.9

-0

2.1

67.48

38.6

Associated Gene:

Gene:

BAZ2B

Ensembl Gene ID:

ENSAPLG00000015688

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027136

38832436 - 38926074

93639

ENSAPLT00000023878

38828946 - 38902865

73920

ENSAPLT00000022536

38832436 - 38902863

70428

ENSAPLT00000047825

38828946 - 38902865

73920

ENSAPLT00000016494

38828946 - 38902865

73920

ENSAPLT00000041419

38838649 - 38902863

64215