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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38843771_38845232_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38843771 - 38845232
Intron Length:
1462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTACAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTGTATTTCACA
Flanking Amino Acid:
IFVEGMESGEGLEEIAKEKE
Intron Amino Acid Position:
1324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
68.3
0.41
1
64.1
41.6
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
56.3
0.19
2
71.81
40.6

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027136
38832436 - 38926074
93639
ENSAPLT00000023878
38828946 - 38902865
73920
ENSAPLT00000022536
38832436 - 38902863
70428
ENSAPLT00000047825
38828946 - 38902865
73920
ENSAPLT00000016494
38828946 - 38902865
73920
ENSAPLT00000041419
38838649 - 38902863
64215