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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38845378_38846591_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38845378 - 38846591
Intron Length:
1214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTAAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTTTAAAA
Flanking Amino Acid:
LEKQIEKLTKQQSQYRKKLF
Intron Amino Acid Position:
1276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.8
0.63
1
75.3
37.5
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
70
0.62
1.3
75.65
35.9

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027136
38832436 - 38926074
93639
ENSAPLT00000023878
38828946 - 38902865
73920
ENSAPLT00000022536
38832436 - 38902863
70428
ENSAPLT00000047825
38828946 - 38902865
73920
ENSAPLT00000016494
38828946 - 38902865
73920
ENSAPLT00000041419
38838649 - 38902863
64215