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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38846655_38848556_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38846655 - 38848556
Intron Length:
1902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGATT
5'SS Class:
major
3'SS Sequence:
TTGGTGATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATAGATTTAATG
Flanking Amino Acid:
GKKAEVCEDEDDGDQTASVE
Intron Amino Acid Position:
1255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
78.6
37.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
69.1
0.43
1
62.3
43.3
Minor 5ss
31.4
-2.1
3.6
47.3
48.3
Minor BPS
51
-0.1
1.6
55.25
40.4

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041419
38838649 - 38902863
64215
ENSAPLT00000016494
38828946 - 38902865
73920
ENSAPLT00000027136
38832436 - 38926074
93639
ENSAPLT00000023878
38828946 - 38902865
73920
ENSAPLT00000047825
38828946 - 38902865
73920
ENSAPLT00000022536
38832436 - 38902863
70428