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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38848801_38853861_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38848801 - 38853861
Intron Length:
5061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CATGTTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
AGCTTCATAATT
Flanking Amino Acid:
DKWMVEGKLRKLRIIHAKKT
Intron Amino Acid Position:
1173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
66.2
0.37
1.1
66.4
38.4
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
58.2
0.33
1.6
71.58
39.6

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027136
38832436 - 38926074
93639
ENSAPLT00000023878
38828946 - 38902865
73920
ENSAPLT00000022536
38832436 - 38902863
70428
ENSAPLT00000047825
38828946 - 38902865
73920
ENSAPLT00000016494
38828946 - 38902865
73920
ENSAPLT00000041419
38838649 - 38902863
64215