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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38849532_38853861_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
38849532 - 38853861
Intron Length:
4330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
GGAACTATAATT
Flanking Amino Acid:
DKWMVEGKLRKVFIEEEGLQ
Intron Amino Acid Position:
1270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
81.9
0.72
0.8
76.5
32.3
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
49.8
0.06
1.6
64.45
39.6

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041250
38849495 - 38902865
53371