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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38857145_38858582_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
38857145 - 38858582
Intron Length:
1438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
AAATCTATTGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCCCTTTTAAAT
Flanking Amino Acid:
KAMEARKKAEEKERLKQEKR
Intron Amino Acid Position:
945

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
59.3
0.21
1.1
58.2
41.1
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
53
0.17
1.4
62.52
41.7

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016494
38828946 - 38902865
73920
ENSAPLT00000041250
38849495 - 38902865
53371
ENSAPLT00000027136
38832436 - 38926074
93639
ENSAPLT00000023878
38828946 - 38902865
73920
ENSAPLT00000047825
38828946 - 38902865
73920
ENSAPLT00000022536
38832436 - 38902863
70428
ENSAPLT00000041419
38838649 - 38902863
64215