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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38858649_38859853_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38858649 - 38859853
Intron Length:
1205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGGTA
5'SS Class:
major
3'SS Sequence:
TCTGTTTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTGTTCTAATC
Flanking Amino Acid:
QELERHRLDMERERRRQHMM
Intron Amino Acid Position:
923

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
67.5
37.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
73.2
0.52
0.9
70
35.3
Minor 5ss
39
-1.2
3.6
51.6
47.5
Minor BPS
55.5
0.15
1.7
69.85
36.3

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027136
38832436 - 38926074
93639
ENSAPLT00000023878
38828946 - 38902865
73920
ENSAPLT00000022536
38832436 - 38902863
70428
ENSAPLT00000041419
38838649 - 38902863
64215
ENSAPLT00000016494
38828946 - 38902865
73920
ENSAPLT00000041250
38849495 - 38902865
53371