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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38858649_38860125_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38858649 - 38860125
Intron Length:
1477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTATA
5'SS Class:
major
3'SS Sequence:
TCTGTTTCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTGTTCTAATC
Flanking Amino Acid:
RQQAVLLKHQERERRRQHMM
Intron Amino Acid Position:
948

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.2
79.2
36.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
73.2
0.52
0.9
70
35.3
Minor 5ss
34.3
-1.8
2.9
42.6
44.3
Minor BPS
55.5
0.15
1.7
69.85
36.3

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047825
38828946 - 38902865
73920