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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38877686_38877945_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38877686 - 38877945
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GTGATTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
AAATATGTGATT
Flanking Amino Acid:
KLRQYPEVVKYLSRNGIMDI
Intron Amino Acid Position:
697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
77.6
31.5
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
80
0.68
0.9
77
41.9
Minor 5ss
47.6
-0.2
2.4
62.3
42.5
Minor BPS
43.9
-0.4
2.1
59.26
38.1

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023878
38828946 - 38902865
73920
ENSAPLT00000047825
38828946 - 38902865
73920
ENSAPLT00000022536
38832436 - 38902863
70428
ENSAPLT00000041419
38838649 - 38902863
64215
ENSAPLT00000041250
38849495 - 38902865
53371
ENSAPLT00000027136
38832436 - 38926074
93639