About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38881180_38882539_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38881180 - 38882539
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGTTTAA
5'SS Class:
major
3'SS Sequence:
CATTTTTTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
ATTTTTTTAAAG
Flanking Amino Acid:
EDDDSDDSQSESDSNSESDT
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1
69.1
33.3
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
77.3
0.61
1
78.2
33.7
Minor 5ss
32.7
-2
3.1
40
46.1
Minor BPS
68.2
0.43
1.4
70.46
36.6

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027136
38832436 - 38926074
93639
ENSAPLT00000023878
38828946 - 38902865
73920
ENSAPLT00000047825
38828946 - 38902865
73920
ENSAPLT00000016494
38828946 - 38902865
73920
ENSAPLT00000041419
38838649 - 38902863
64215
ENSAPLT00000041250
38849495 - 38902865
53371