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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38883150_38885240_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38883150 - 38885240
Intron Length:
2091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTGAA
5'SS Class:
major
3'SS Sequence:
CTTATTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTCTTCTTATTT
Flanking Amino Acid:
PLTSDIRSKREQYKQTFPAA
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
67.4
33.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.6
0.73
0.7
81.4
30.5
Minor 5ss
27.8
-2.5
3
27.4
37.6
Minor BPS
63
0.49
1.6
75.8
41.6

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023878
38828946 - 38902865
73920
ENSAPLT00000047825
38828946 - 38902865
73920
ENSAPLT00000022536
38832436 - 38902863
70428
ENSAPLT00000041419
38838649 - 38902863
64215
ENSAPLT00000016494
38828946 - 38902865
73920
ENSAPLT00000041250
38849495 - 38902865
53371
ENSAPLT00000027136
38832436 - 38926074
93639