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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38890399_38891472_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38890399 - 38891472
Intron Length:
1074

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGCT
5'SS Class:
major
3'SS Sequence:
CTGTCATTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAAGT
Flanking Amino Acid:
GKNSRGSTEKGINGSLNGNS
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.4
37.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
68.9
0.43
1.1
72
37.3
Minor 5ss
31.9
-2.1
3.6
48.1
47.5
Minor BPS
75.6
0.88
1.5
90.89
33.1

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027136
38832436 - 38926074
93639
ENSAPLT00000023878
38828946 - 38902865
73920
ENSAPLT00000047825
38828946 - 38902865
73920
ENSAPLT00000022536
38832436 - 38902863
70428
ENSAPLT00000041419
38838649 - 38902863
64215
ENSAPLT00000016494
38828946 - 38902865
73920
ENSAPLT00000041250
38849495 - 38902865
53371