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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38891635_38902709_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38891635 - 38902709
Intron Length:
11075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTGGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTTCATT
Flanking Amino Acid:
ASLSSTINTCEWWRTADTHS
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
32.8
Major BPS
100
1.24
0.5
100
0
Major PPT
74
0.54
1
68.6
42
Minor 5ss
37.5
-1.4
3.1
50.4
45.6
Minor BPS
60.5
0.41
1.7
78.42
39.1

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016494
38828946 - 38902865
73920
ENSAPLT00000047825
38828946 - 38902865
73920
ENSAPLT00000041419
38838649 - 38902863
64215
ENSAPLT00000023878
38828946 - 38902865
73920