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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38895557_38902709_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38895557 - 38902709
Intron Length:
7153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GCAATTTCAAGT
Flanking Amino Acid:
ASLSSTINTCGYMFRTAGEQ
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
32.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
87.1
0.83
0.6
85.7
21.4
Minor 5ss
37.5
-1.4
3.1
50.4
45.6
Minor BPS
44
-0.3
1.8
53.77
41.7

Associated Gene:

Gene:
BAZ2B
Ensembl Gene ID:
ENSAPLG00000015688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041250
38849495 - 38902865
53371
ENSAPLT00000027136
38832436 - 38926074
93639
ENSAPLT00000022536
38832436 - 38902863
70428