Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38987390_38990089_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

38987390 - 38990089

Intron Length:

2700

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGGTT

5'SS Class:

strong_major

3'SS Sequence:

TGTTGTTCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTGAT

U12 Branch Point Sequence:

TATCTGATAAGC

Flanking Amino Acid:

SSRRLDSGYQESTVLSTSGR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

78.8

35.1

Major BPS

82.5

0.81

0.8

71.4

36.6

Major PPT

0.77

0.8

81.3

36.4

Minor 5ss

35.2

-1.7

3.8

55.5

48.6

Minor BPS

42.2

-0.6

2.4

57.48

Associated Gene:

Gene:

MARCHF7

Ensembl Gene ID:

ENSAPLG00000015604

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032008

38986609 - 39008148

21540

ENSAPLT00000020156

38982577 - 39008148

25572

ENSAPLT00000016273

38987213 - 39008148

20936

ENSAPLT00000039735

38987213 - 39008148

20936