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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38993716_38995322_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38993716 - 38995322
Intron Length:
1607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTATAAAAA
Flanking Amino Acid:
VRNNGLTAFSDASWRYSRIP
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86
0.81
0.6
80.7
31.3
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
49.1
-0
2
66.42
39.5

Associated Gene:

Gene:
MARCHF7
Ensembl Gene ID:
ENSAPLG00000015604
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039735
38987213 - 39008148
20936
ENSAPLT00000032008
38986609 - 39008148
21540
ENSAPLT00000020156
38982577 - 39008148
25572