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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38993716_38998712_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38993716 - 38998712
Intron Length:
4997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTGCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTCCTGCAACA
Flanking Amino Acid:
VRNNGLTAFSDLQDRPASSY
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
74.1
0.54
0.9
69.8
35.4
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
51.2
0.04
2.2
73.01
38.9

Associated Gene:

Gene:
MARCHF7
Ensembl Gene ID:
ENSAPLG00000015604
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016273
38987213 - 39008148
20936