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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38995491_38998712_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38995491 - 38998712
Intron Length:
3222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TTTCCTGCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTTCCTGCAACA
Flanking Amino Acid:
YRSNDLSSSTYLQDRPASSY
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
85.6
30.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
74.1
0.54
0.9
69.8
35.4
Minor 5ss
50.8
0.03
2.5
73.1
36.3
Minor BPS
51.2
0.04
2.2
73.01
38.9

Associated Gene:

Gene:
MARCHF7
Ensembl Gene ID:
ENSAPLG00000015604
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020156
38982577 - 39008148
25572
ENSAPLT00000039735
38987213 - 39008148
20936
ENSAPLT00000032008
38986609 - 39008148
21540