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Intron Name: Anas_platyrhynchos_platyrhynchos_7_3899631_3902036_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3899631 - 3902036

Intron Length:

2406

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGATGT

5'SS Class:

strong_major

3'SS Sequence:

TTCCTTTCCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TTCCTTTCCACA

Flanking Amino Acid:

RPLKVINYLEGEAVRLARQL

Intron Amino Acid Position:

872

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

81.6

33.2

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

83.7

0.76

0.7

79.4

26.2

Minor 5ss

39.7

-1.2

3.1

56.6

47.5

Minor BPS

46.2

-0.3

1.9

40.4

Associated Gene:

Gene:

PMS1

Ensembl Gene ID:

ENSAPLG00000011887

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012420

3899439 - 3940418

40980