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Intron Name: Anas_platyrhynchos_platyrhynchos_7_3899939_3902036_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3899939 - 3902036

Intron Length:

2098

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGATGT

5'SS Class:

strong_major

3'SS Sequence:

CTGTTGCCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTGAT

U12 Branch Point Sequence:

ATGTCTTCAGTT

Flanking Amino Acid:

RPLKVINYLEKILHSETLSI

Intron Amino Acid Position:

872

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

81.6

33.2

Major BPS

74.7

0.61

0.9

63.4

35.6

Major PPT

0.41

62.4

38.7

Minor 5ss

39.7

-1.2

3.1

56.6

47.5

Minor BPS

0.14

1.8

70.35

41.3

Associated Gene:

Gene:

PMS1

Ensembl Gene ID:

ENSAPLG00000011887

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044338

3899828 - 3940418

40591