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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_38999508_38999675_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
38999508 - 38999675
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCGCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGGAA
U12 Branch Point Sequence:
AGTTCTGGAATT
Flanking Amino Acid:
SQHVFRRRASVPPTLGSSLS
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
49.8
-0
1.4
51.3
44.2
Major PPT
86.3
0.82
0.8
80.7
31.3
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
49.4
0.04
2.1
71.8
39.5

Associated Gene:

Gene:
MARCHF7
Ensembl Gene ID:
ENSAPLG00000015604
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020156
38982577 - 39008148
25572
ENSAPLT00000032008
38986609 - 39008148
21540