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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_39000248_39001586_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39000248 - 39001586
Intron Length:
1339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
GCTTCCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GATTTCTTACCT
Flanking Amino Acid:
KKWLQSKINSGSSLEAVTTC
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
64.6
0.33
1
59.1
36.1
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
68.5
0.66
1.6
81.59
39.7

Associated Gene:

Gene:
MARCHF7
Ensembl Gene ID:
ENSAPLG00000015604
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032008
38986609 - 39008148
21540
ENSAPLT00000020156
38982577 - 39008148
25572
ENSAPLT00000016273
38987213 - 39008148
20936
ENSAPLT00000039735
38987213 - 39008148
20936