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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_39001697_39003121_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39001697 - 39003121
Intron Length:
1425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTAGTATA
5'SS Class:
major
3'SS Sequence:
GATCTCCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTCTTTTGATC
Flanking Amino Acid:
ELYRAHANEQADYEFISSGL
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
82
30.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
66.6
0.37
1.1
68.6
37.3
Minor 5ss
37.4
-1.4
2.7
44.7
36.6
Minor BPS
66.4
0.5
1.1
74.06
30.2

Associated Gene:

Gene:
MARCHF7
Ensembl Gene ID:
ENSAPLG00000015604
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020156
38982577 - 39008148
25572
ENSAPLT00000016273
38987213 - 39008148
20936
ENSAPLT00000039735
38987213 - 39008148
20936
ENSAPLT00000032008
38986609 - 39008148
21540