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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_39003236_39005215_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39003236 - 39005215
Intron Length:
1980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
GCCTTGTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AACTTTTAAACT
Flanking Amino Acid:
TASEASTRVRFINLARTLQA
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.5
40.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.3
0.52
0.9
64.8
41.3
Minor 5ss
40.6
-1
2.8
48.1
41.6
Minor BPS
57.2
0.3
1.6
70.42
41

Associated Gene:

Gene:
MARCHF7
Ensembl Gene ID:
ENSAPLG00000015604
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039735
38987213 - 39008148
20936
ENSAPLT00000032008
38986609 - 39008148
21540
ENSAPLT00000020156
38982577 - 39008148
25572