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Intron Name: Anas_platyrhynchos_platyrhynchos_7_3909145_3909686_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3909145 - 3909686

Intron Length:

542

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATAGTAC

5'SS Class:

major

3'SS Sequence:

TTTTTCTTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

TATTTTTTAACT

Flanking Amino Acid:

KLDKPIVLTDSILGGSHYMS

Intron Amino Acid Position:

774

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

65.1

35.3

Major BPS

87.3

0.93

0.8

36.5

Major PPT

95.4

1.02

0.6

88.7

28.3

Minor 5ss

42.5

-0.8

3.2

57.8

47.2

Minor BPS

83.8

1.14

0.9

92.59

29.1

Associated Gene:

Gene:

PMS1

Ensembl Gene ID:

ENSAPLG00000011887

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044338

3899828 - 3940418

40591

ENSAPLT00000012420

3899439 - 3940418

40980