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Intron Name: Anas_platyrhynchos_platyrhynchos_7_3910137_3915397_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3910137 - 3915397

Intron Length:

5261

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTTTTAAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGTTCAA

U12 Branch Point Sequence:

CTTGGTTCAACT

Flanking Amino Acid:

WKNLNEEEKKNYEIKAAKDL

Intron Amino Acid Position:

624

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.5

0.88

0.9

85.1

25.6

Major BPS

57.8

0.2

1.3

63.4

44.3

Major PPT

82.1

0.72

0.9

24.1

Minor 5ss

46.5

-0.4

2.7

61.9

36.7

Minor BPS

49.1

0.01

2.1

71.32

46.1

Associated Gene:

Gene:

PMS1

Ensembl Gene ID:

ENSAPLG00000011887

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044338

3899828 - 3940418

40591

ENSAPLT00000012420

3899439 - 3940418

40980