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Intron Name: Anas_platyrhynchos_platyrhynchos_7_3917646_3919268_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3917646 - 3919268

Intron Length:

1623

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACATCC

5'SS Class:

major

3'SS Sequence:

AACGAATCTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAA

U12 Branch Point Sequence:

CTTTGCTAAACG

Flanking Amino Acid:

RPVLQKEILKLIRQYYSAAS

Intron Amino Acid Position:

275

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.1

69.5

36.3

Major BPS

70.1

0.5

1.1

69.9

35.3

Major PPT

61.2

0.25

51.7

41.8

Minor 5ss

44.7

-0.6

2.8

60.7

43.8

Minor BPS

0.02

2.2

66.67

47.1

Associated Gene:

Gene:

PMS1

Ensembl Gene ID:

ENSAPLG00000011887

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044338

3899828 - 3940418

40591

ENSAPLT00000012420

3899439 - 3940418

40980