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Intron Name: Anas_platyrhynchos_platyrhynchos_7_3933842_3935297_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3933842 - 3935297

Intron Length:

1456

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGATGC

5'SS Class:

strong_major

3'SS Sequence:

CACATGCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAC

U12 Branch Point Sequence:

TTTTTCTCACAT

Flanking Amino Acid:

TSQRPSHLGQGTTVTVLKLF

Intron Amino Acid Position:

140

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

66.9

Major BPS

0.87

0.8

85.6

Major PPT

69.4

0.44

61.3

39.7

Minor 5ss

36.9

-1.5

3.3

50.4

46.2

Minor BPS

56.6

0.29

1.9

81.14

40.4

Associated Gene:

Gene:

PMS1

Ensembl Gene ID:

ENSAPLG00000011887

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044338

3899828 - 3940418

40591

ENSAPLT00000012420

3899439 - 3940418

40980