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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3937539_3940264_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3937539 - 3940264
Intron Length:
2726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTGTCTGTGATA
Flanking Amino Acid:
ASATSIDVKLEYYGFNKIEV
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
74.6
0.55
1.7
88.4
28.7
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
53.7
0.11
2
69.19
38.1

Associated Gene:

Gene:
PMS1
Ensembl Gene ID:
ENSAPLG00000011887
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044338
3899828 - 3940418
40591
ENSAPLT00000012420
3899439 - 3940418
40980