Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3944668_3946916_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3944668 - 3946916

Intron Length:

2249

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTACC

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCCCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GATAAAA

U12 Branch Point Sequence:

TGTCACTGTATT

Flanking Amino Acid:

WTLTNVIHNLGMYVFLHAVK

Intron Amino Acid Position:

239

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

76.7

31.8

Major BPS

-0

1.2

57.3

36.3

Major PPT

80.3

0.68

0.7

77.8

Minor 5ss

31.7

-2.1

2.6

35.1

34.5

Minor BPS

46.9

-0.1

1.9

68.54

41.6

Associated Gene:

Gene:

ORMDL1

Ensembl Gene ID:

ENSAPLG00000016520

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023737

3942472 - 3949056

6585