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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3950993_3951642_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3950993 - 3951642
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTAACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAACT
Flanking Amino Acid:
ALQCQREVHLKTGGIIPHVA
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
83.6
27.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72.1
0.5
1
67.7
42.7
Minor 5ss
38.8
-1.3
3.1
49.9
40.5
Minor BPS
82.1
1.09
1
91
32.8

Associated Gene:

Gene:
OSGEPL1
Ensembl Gene ID:
ENSAPLG00000011542
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031561
3945970 - 3954049
8080
ENSAPLT00000024885
3949813 - 3954049
4237
ENSAPLT00000012047
3946213 - 3954049
7837