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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3953552_3953679_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3953552 - 3953679
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTGCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTACATAATT
Flanking Amino Acid:
LCTDNGVMIAWNGIERLRAG
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80
0.68
0.8
81
31
Minor 5ss
35
-1.7
3.2
47
42.5
Minor BPS
69.3
0.68
1.8
90.28
33.2

Associated Gene:

Gene:
OSGEPL1
Ensembl Gene ID:
ENSAPLG00000011542
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031561
3945970 - 3954049
8080
ENSAPLT00000024885
3949813 - 3954049
4237
ENSAPLT00000012047
3946213 - 3954049
7837