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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3953752_3953958_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3953752 - 3953958
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTATTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CTTTTATCAAAT
Flanking Amino Acid:
NSTEGIRFEPKAPLGTDISN
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
81.3
0.7
0.8
73.8
41.4
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
51.1
0.11
1.9
74.46
42

Associated Gene:

Gene:
OSGEPL1
Ensembl Gene ID:
ENSAPLG00000011542
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024885
3949813 - 3954049
4237
ENSAPLT00000012047
3946213 - 3954049
7837
ENSAPLT00000031561
3945970 - 3954049
8080