Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3955104_3955613_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3955104 - 3955613

Intron Length:

510

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGTATTG

5'SS Class:

major

3'SS Sequence:

TCTTTGTCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTATAAT

U12 Branch Point Sequence:

GTATCTATAATT

Flanking Amino Acid:

RIIGDHGKEARFPFLDEDVV

Intron Amino Acid Position:

555

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.1

65.3

41.4

Major BPS

75.5

0.63

1.1

34.4

Major PPT

82.6

0.73

0.8

81.3

30.8

Minor 5ss

40.2

-1.1

3.4

55.8

48.4

Minor BPS

64.2

0.52

1.6

78.66

37.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011527

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012004

3954842 - 3960162

5321