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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3958794_3959649_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3958794 - 3959649
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCACACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTATTTTTATCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
81.6
33.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.4
0.64
0.9
73.5
35.8
Minor 5ss
45.5
-0.5
2.8
58.6
40.2
Minor BPS
60.2
0.32
1.6
68.32
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011527
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012004
3954842 - 3960162
5321
Gene:
Ensembl Gene ID:
ENSAPLG00000027316
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034087
3958723 - 3964993
6271