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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3959726_3960108_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3959726 - 3960108
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
TTTCCCTTAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
81.4
0.85
1.2
81.08
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011527
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012004
3954842 - 3960162
5321
Gene:
Ensembl Gene ID:
ENSAPLG00000027316
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034087
3958723 - 3964993
6271