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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3987497_3987591_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3987497 - 3987591
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTCAGTGGG
5'SS Class:
major
3'SS Sequence:
TGTTCCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAG
U12 Branch Point Sequence:
CAGCGCTCAGTT
Flanking Amino Acid:
EPAGERRRRCGSVLGYFTSA
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.3
58.3
46.6
Major BPS
49.4
-0
1.7
60.7
45.9
Major PPT
80.8
0.69
0.8
74.3
30.8
Minor 5ss
28
-2.5
3
32.9
41.8
Minor BPS
40.2
-0.6
2
50.64
43.6

Associated Gene:

Gene:
SLC40A1
Ensembl Gene ID:
ENSAPLG00000011355
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011846
3987451 - 4001415
13965