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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3992874_3993191_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3992874 - 3993191
Intron Length:
318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
CCCATTTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTTTTCTCACCT
Flanking Amino Acid:
LLTLYHGWLLTMCYILVITI
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
69.6
34.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
73
0.52
0.8
65
36.3
Minor 5ss
32.5
-2
3.3
47.5
42.3
Minor BPS
59
0.36
1.9
79.4
43

Associated Gene:

Gene:
SLC40A1
Ensembl Gene ID:
ENSAPLG00000011355
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011846
3987451 - 4001415
13965