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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4031197_4032402_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4031197 - 4032402
Intron Length:
1206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTCCTTTTACA
Flanking Amino Acid:
NSLLISKEKESAEEVADEVE
Intron Amino Acid Position:
826

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.4
0.86
0.7
83
25.4
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
63.1
0.41
1.6
72.64
39.2

Associated Gene:

Gene:
WDR75
Ensembl Gene ID:
ENSAPLG00000011060
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011531
4030989 - 4045778
14790