About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4035019_4036771_R


Intron Information:

Intron Rank:
14

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
4035019 - 4036771

Intron Length:
1753

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTATGTTTG

5'SS Class:
strong_major

3'SS Sequence:
TTTGCTTCTGTAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTGAC

U12 Branch Point Sequence:
AGGTCATTAACT

Flanking Amino Acid:
CTFCHPPGKIRDICFGRLTC

Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
88.6
0.91
0.8
80.5
35

Major BPS
86.5
0.91
0.8
77.4
37.4

Major PPT
82.1
0.72
0.8
77.8
31

Minor 5ss
49.9
-0
2.4
66.4
45.1

Minor BPS
69.6
0.69
1.6
80.85
40.3

Associated Gene:

Gene:
WDR75

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

4030989 - 4045778
14790

4031948 - 4045778
13831