About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4042564_4043416_R


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
4042564 - 4043416

Intron Length:
853

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTATATTCG

5'SS Class:
major

3'SS Sequence:
TTTACTGTAACAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTTTTAC

U12 Branch Point Sequence:
TGTTCTTTTACT

Flanking Amino Acid:
SPKCTAFGREGEYVASVKNL

Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.3
0.64
1
67.4
38.5

Major BPS
74.2
0.6
1
67
39.4

Major PPT
74.2
0.55
1
69.6
40.3

Minor 5ss
46
-0.4
2.5
59
45.7

Minor BPS
74.5
0.85
1.5
88.94
35.5

Associated Gene:

Gene:
WDR75

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

4030989 - 4045778
14790

4031948 - 4045778
13831