Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4159856_4160545_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4159856 - 4160545

Intron Length:

690

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTGAGTCCA

5'SS Class:

major

3'SS Sequence:

TTGCCTTATTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

GTAACTTTAATT

Flanking Amino Acid:

QKGEPGIVPPVSGIRGRPGP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.8

0.44

1.1

39.3

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

74.8

0.56

0.9

74.1

35.7

Minor 5ss

-2.1

2.9

43.6

43.3

Minor BPS

70.2

0.71

1.2

78.45

37.7

Associated Gene:

Gene:

COL5A2

Ensembl Gene ID:

ENSAPLG00000007858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008658

4107852 - 4211173

103322