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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_4161299_4164791_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4161299 - 4164791
Intron Length:
3493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TCTGCATTTATC
Flanking Amino Acid:
RGERGPKGRPGPRGPQGIDG
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.3
33.6
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
85.2
0.79
0.7
78.2
35.7
Minor 5ss
44.8
-0.6
2.9
68.1
42.7
Minor BPS
48.9
-0.1
2
63.33
42.6

Associated Gene:

Gene:
COL5A2
Ensembl Gene ID:
ENSAPLG00000007858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008658
4107852 - 4211173
103322