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Intron Name: Anas_platyrhynchos_platyrhynchos_7_4164903_4166451_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4164903 - 4166451

Intron Length:

1549

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

ATATTTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

CGACACTTAAAA

Flanking Amino Acid:

THPGPDGLSRPFAAQMAGLD

Intron Amino Acid Position:

144

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

87.9

29.3

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

87.1

0.83

0.8

85.3

34.4

Minor 5ss

45.7

-0.5

2.8

45.5

Minor BPS

49.9

-0

1.7

57.43

40.8

Associated Gene:

Gene:

COL5A2

Ensembl Gene ID:

ENSAPLG00000007858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008658

4107852 - 4211173

103322