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Intron Name: Anas_platyrhynchos_platyrhynchos_7_4166530_4168071_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4166530 - 4168071

Intron Length:

1542

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGACCA

5'SS Class:

strong_major

3'SS Sequence:

ATGGTTTTGATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

CAGTGTGTAACT

Flanking Amino Acid:

SQMGLMPGAVGPVGPRGPQG

Intron Amino Acid Position:

170

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.74

38.2

Major BPS

88.7

0.96

0.8

36.5

Major PPT

65.3

0.34

1.1

61.6

44.1

Minor 5ss

32.4

-2

37.8

40.6

Minor BPS

45.9

-0.2

2.3

64.04

46.7

Associated Gene:

Gene:

COL5A2

Ensembl Gene ID:

ENSAPLG00000007858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008658

4107852 - 4211173

103322