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Intron Name: Anas_platyrhynchos_platyrhynchos_7_4168117_4168661_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4168117 - 4168661

Intron Length:

545

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTACTAATTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GAATTTTTAATT

Flanking Amino Acid:

RGPQGLQGKQGGAGPTGPPG

Intron Amino Acid Position:

185

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

0.8

88.1

25.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

74.1

0.54

0.9

71.6

38.1

Minor 5ss

40.3

-1.1

3.4

58.5

40.4

Minor BPS

68.1

0.65

1.1

74.24

36.6

Associated Gene:

Gene:

COL5A2

Ensembl Gene ID:

ENSAPLG00000007858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008658

4107852 - 4211173

103322